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	<title>Save Our Seas Blogs &#187; genetics</title>
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	<description>Reports from our correspondents across the world.</description>
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		<title>Using DNA forensics to track the trade in shark fins</title>
		<link>http://www.saveourseas.com/blogs/news/2192</link>
		<comments>http://www.saveourseas.com/blogs/news/2192#comments</comments>
		<pubDate>Thu, 03 Dec 2009 11:06:37 +0000</pubDate>
		<dc:creator>James Lea</dc:creator>
				<category><![CDATA[SOSF News]]></category>
		<category><![CDATA[conservation]]></category>
		<category><![CDATA[enforcement]]></category>
		<category><![CDATA[genetics]]></category>
		<category><![CDATA[hammerhead shark]]></category>

		<guid isPermaLink="false">http://www.saveourseas.com/blogs/?p=2192</guid>
		<description><![CDATA[SOSF funded Professor Mahmood Shivji of the Guy Harvey Research Institute and Save Our Seas Shark Centre at Nova Southeastern University has been tracking the international trade in shark fins using methods that wouldn&#8217;t look out of place in an episode of Crime Scene Investigation. By sequencing mitochondrial DNA of both wild shark populations and [...]]]></description>
			<content:encoded><![CDATA[<p>SOSF funded <a title="Mahmood's Profile" href="http://www.nova.edu/ocean/profiles/shivji/shivji.html" target="_blank">Professor Mahmood Shivji</a> of the <a title="GHRI Homepage" href="http://www.nova.edu/ocean/ghri/index.html" target="_blank">Guy Harvey Research Institute</a> and Save Our Seas Shark Centre at <a title="NSU Homepage" href="http://www.nova.edu/" target="_blank">Nova Southeastern University</a> has been tracking the international trade in shark fins using methods that wouldn&#8217;t look out of place in an episode of Crime Scene Investigation. By sequencing mitochondrial DNA of both wild shark populations and fins in markets it is possible for Mahmood and his team to tell where in the world the fins at market came from &#8211; a process called &#8216;genetic stock identification&#8217;.</p>
<p>Most recently they have been able to identify that <a title="Mahmood's paper in 'Endangered Species Research'" href="http://www.int-res.com/prepress/n00241.html" target="_blank">21% of scalloped hammerhead fins sampled from Hong Kong markets were actually sourced from western Atlantic populations</a>, where the species is already listed as endangered by the <a title="IUCN Homepage" href="http://www.iucn.org/" target="_blank">IUCN</a>. The samples from the western Atlantic also identified three subdivisions within the population due to particular sequences being geographically segregated, indicating that breeding females either remain close, or home back, to their natal region of origin for parturition.</p>
<div id="attachment_2193" class="wp-caption aligncenter" style="width: 490px"><img class="size-full wp-image-2193" src="http://www.saveourseas.com/blogs/wp-content/uploads/2009/12/danbeecham.jpg" alt="Hammerhead shark at market. Photo by Dan Beecham." width="480" height="358" /><p class="wp-caption-text">Hammerhead shark at market. Photo by Dan Beecham.</p></div>
<p><span id="more-2192"></span></p>
<p>&#8216;The fact that scalloped hammerhead shark DNA shows strong population DNA signatures means that we can trace the geographic origin of most of their fins sold at markets,&#8217; Mahmood said. &#8216;From a broader perspective, this type of DNA forensic testing of fins will be an incredibly useful tool to prioritize areas for conservation and ensure sharks aren&#8217;t wiped out in particular regions by excessive fishing.&#8217;</p>
<p>One of Mahmood&#8217;s co-authors, Dr Demian Chapman plans to attend the <a title="'Convention on International Trade in Endangered Species' Homepage" href="http://www.cites.org/" target="_blank">CITES</a> meeting in Qatar this coming March to urge that scalloped hammerheads are listed under <a title="What an Appendix II listing means" href="http://www.cites.org/eng/app/index.shtml" target="_blank">Appendix II</a> to receive more comprehensive protection from the international market.</p>
<p>To learn more about Mahmood&#8217;s research be sure to check out his project page <a title="Shark DNA Forensics" href="http://www.saveourseas.com/shark-dna-forensics" target="_blank">here</a>.</p>
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		<title>The skates formerly known as common</title>
		<link>http://www.saveourseas.com/blogs/news/2180</link>
		<comments>http://www.saveourseas.com/blogs/news/2180#comments</comments>
		<pubDate>Wed, 25 Nov 2009 11:47:03 +0000</pubDate>
		<dc:creator>James Lea</dc:creator>
				<category><![CDATA[SOSF News]]></category>
		<category><![CDATA[DNA]]></category>
		<category><![CDATA[extinction]]></category>
		<category><![CDATA[genetics]]></category>
		<category><![CDATA[over-fishing]]></category>
		<category><![CDATA[skate]]></category>

		<guid isPermaLink="false">http://www.saveourseas.com/blogs/?p=2180</guid>
		<description><![CDATA[It was recently revealed via genetic analyses that the already critically endangered common skate (Dipturus batis) in Europe is in fact two different species: the flapper and blue skate (D. intermedia and D. flossada). Consequently catches of the smaller, more resilient blue skate have in fact been masking the more rapid decline of the flapper skate, [...]]]></description>
			<content:encoded><![CDATA[<p>It was recently revealed via genetic analyses that the already critically endangered common skate (<em>Dipturus batis</em>) in Europe is in fact <a title="Original scientific article" href="http://www3.interscience.wiley.com/journal/122682780/abstract" target="_blank">two different species</a>: the flapper and blue skate (<em>D. intermedia and</em> <em>D. flossada</em>). Consequently catches of the smaller, more resilient blue skate have in fact been masking the more rapid decline of the flapper skate, dramatically reducing the perceived population size. Dr Iglesias, who led the study, stated:</p>
<p>&#8216;The threat of extinction for European <em>Dipturus </em>together with mislabelling in fishery statistics highlight the need for a huge reassessment of population for the different <em>Dipturus </em>species in European waters. Without revision and recognition of its distinct status the world&#8217;s largest skate, <em>D. intermedia</em>, could soon be rendered <strong>extinct</strong>.&#8217;<span id="more-2180"></span></p>
<p>Similarly, genetic analysis of ragged-tooth sharks (<em>Carcharias taurus</em>) has found that the critically endangered population of Australia, although still the same species, <a title="Original scientific paper" href="http://www3.interscience.wiley.com/journal/122616360/abstract" target="_blank">may in fact be divided between eastern and western populations</a>, essentially requiring that they are now managed as two separate populations: one does not have the ability to replenish the other.</p>
<p>Genetic tools can prove incredibly powerful, providing insights that direct observations and fisheries records can easily miss. Be sure to read more on how the <a title="Shark DNA forensics" href="http://www.saveourseas.com/shark-dna-forensics" target="_blank">SOSF shark DNA forensics project</a> aims to characterise the global population structure of shark species and implement techniques to identify featureless fins from their &#8216;DNA barcode&#8217;, thereby aiding enforcement efforts to prevent trade in protected species.</p>
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		<title>Pacific White Sharks Keep to Themselves</title>
		<link>http://www.saveourseas.com/blogs/news/2100</link>
		<comments>http://www.saveourseas.com/blogs/news/2100#comments</comments>
		<pubDate>Tue, 10 Nov 2009 10:21:45 +0000</pubDate>
		<dc:creator>James Lea</dc:creator>
				<category><![CDATA[SOSF News]]></category>
		<category><![CDATA[conservation]]></category>
		<category><![CDATA[genetics]]></category>
		<category><![CDATA[migration]]></category>
		<category><![CDATA[pacific]]></category>
		<category><![CDATA[philoparty]]></category>
		<category><![CDATA[white shark]]></category>

		<guid isPermaLink="false">http://www.saveourseas.com/blogs/?p=2100</guid>
		<description><![CDATA[Great white sharks are capable of travelling large distances over relatively short periods of time, but a recent publication has found that the white sharks of the North Pacific have over time formed a genetically distinct population despite their ability to undertake transoceanic migrations. Essentially there is no interbreeding between white sharks from the North [...]]]></description>
			<content:encoded><![CDATA[<p>Great white sharks are capable of travelling <a title="Transoceanic migration of a white shark" href="http://www.sciencemag.org/cgi/content/abstract/310/5745/100" target="_blank">large distances over relatively short periods of time</a>, but a <a title="Philopatry and migration of pacific white sharks" href="http://rspb.royalsocietypublishing.org/content/early/2009/10/29/rspb.2009.1155.full?sid=987f60a6-7fe6-492b-afb3-7469662a9eec" target="_blank">recent publication</a> has found that the white sharks of the North Pacific have over time formed a genetically distinct population despite their ability to undertake transoceanic migrations. Essentially there is no interbreeding between white sharks from the North Pacific and those from other regions such as Australia and South Africa.</p>
<p>&#8220;Individuals persistently return to the same network of coastal hotspots following distant oceanic migrations and comprise a population genetically distinct from previously identified phylogenetic clades.&#8221; state the authors of the article published in <a title="Proceeding of the Royal Society B homepage" href="http://rspb.royalsocietypublishing.org/" target="_blank">Proceedings of the Royal Society B</a>. They used a combination of acoustic and satellite tags, as well as tissue samples for DNA analyses, to demonstrate this strong homing behaviour that has presumably generated this genetic isolation from other populations, frequenting areas such as Hawai&#8217;i, the coast of California and a mid ocean spot termed &#8216;white shark café&#8217;.<span id="more-2100"></span></p>
<p>The authors emphasise that this isolation highlights the need for North Pacific white sharks to be recognised as a &#8220;demographically independent management unit&#8221;. As such in management terms they may as well be a separate species, warranting their own protection measures independent of other white shark populations, even in the rest of the Pacific.</p>
<p>To read about the study in greater detail, along with some fantastic diagrams to help illustrate what the white sharks are up to, check out the <a title="Philopatry and migration of pacific white sharks" href="http://rspb.royalsocietypublishing.org/content/early/2009/10/29/rspb.2009.1155.full?sid=987f60a6-7fe6-492b-afb3-7469662a9eec" target="_blank">original publication here</a>.</p>
<p>Also be sure to check out ongoing research into the behaviour of South African white sharks over at the <a title="SOSF White Shark Project homepage" href="http://www.saveourseas.com/white-sharks" target="_blank">SOSF White Shark Project homepage</a>.</p>
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